WGS Extract Beta v5 Shell Scripts folder
Full source code and documentation at https://wgse.bio/

These are BASH shell scripts to support the Installation and
management of the WGS Extract system.  They should generally
not be used directly.  Most are called internally from the
User scripts in the main directory.

Scripts starting with 'z' are delivered in the installer package
and should not be called directly.  They are "sourced" by other
scripts here and in the main installation directory above. They
provide common functions across multiple scripts. Mostly to support
the main user scripts in the main installation folder above. Some
may be deleted after installation depending on your OS platform.

Non-'z' scripts are delivered in the program package. They exist to
manipulate the reference genome library. They are called instead of
sourced.  library_common.sh is called from the OS specific
Library wrappers and implements the command-line level library command.
*refgenome are called from library_common and the python reference library
code to get and process the reference genomes in the reference library.

The make_release* files are for making a WGS Extract distribution and
normally deleted during install so the user never sees them.  They are
included in the installer package.

Eventually all (or most) of this code should be moved to python.
